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eSCRATCHY, v1.0
Last Updated 04/23/02
ReadMe.txt
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Contents of eSCRATCHY 1.0 distribution:

1) main.f - the main eSCRATCHY program

2) global.f - declaration of global variables

3) Sample XL FORTRAN 90 compilation commands:
  - compile_command 
  - compile_command_Lgt50 - to be used to reduce CPU time when fragmentation
                            length is greater than 50-nt

4) Data files:
  - comp_Gvalues - contains a list of nearest-neighbor enthalpy/entropy values

5) Subroutines:
  - allHS.f
  - apxselcalc.f
  - bound.f
  - cate.f
  - conc.f
  - mapper.f
  - realselcalc.f
  - selcalc.f
  - thermocalc.f
  - xover.f

6) sample_sequences - a pair of purN nucleotide sequences in the
                      correct format (636 nt each)

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Contact Costas Maranas (costas@psu.edu) or
        Greg Moore (greg@cyprus.che.psu.edu) with questions and comments.

Also see:
Lutz, S., M. Ostermeier, G.L. Moore, C.D. Maranas, and S.J. Benkovic (2001),
"Creating multiple-crossover DNA libraries independent of sequence identity,"
Proc. Natl. Acad. Sci. USA, 98, 11248-11253.

http://fenske.che.psu.edu/CMaranas/
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